GlycoEpitope: A Database for Carbohydrate Antigen and Antibody.
Shujiro Okuda, Hiromi Nakao and Toshisuke Kawasaki GlycoEpitope: A Database for Carbohydrate Antigen and Antibody. Glycoscience: Biology and Medicine、 267-273 (2014). (ISBN 978-4-431-54840-9)
Concept of Japan Proteome Standard repository/database (jPOST).
Kawano, S., Ishihama, Y., Yamamoto, T., Okuda, S., Tomonaga, T., Matsumoto, M., Nakagami, H., Kondo, T., Ono, M., Ohtsuki, S., Araki, N. Concept of Japan Proteome Standard repository/database (jPOST). HUPO2014, Madrid (2014/10).
Transcriptome changes for Vaucheria frigida in response to various light conditions.
Takahashi, F., Okuda, S., Kasahara, M. Transcriptome changes for Vaucheria frigida in response to various light conditions. Photobiology2014, Córdoba Argentina (2014/9).
A web tool to infer metagenomic contents from16S rRNA sequences.
Okuda, S., Watanabe, Y. A web tool to infer metagenomic contents from16S rRNA sequences. ISME2014, Seoul (2014/8).
Characterizatoin of protein phosphorylation in the context of evolution.
Okuda, S., Yoshizaki, H. Characterizatoin of protein phosphorylation in the context of evolution. ISMB2014, Boston (2014/7).
Elucidation of the evolutionary expansion of phosphorylation signaling networks using comparative phosphomotif analysis.
Yoshizaki, H., Okuda S. Elucidation of the evolutionary expansion of phosphorylation signaling networks using comparative phosphomotif analysis. BMC Genomics 15:546 (2014).
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
Katayama, T., Wilkinson M. D., Aoki-Kinoshita, K. F., Kawashima, S., Yamamoto, Y., Yamaguchi, A., Okamoto, S., Kawano, S., Kim, J. D., Wang, Y., Wu, H., Kano, Y., Ono, H., Bono, H., Kocbek, S., Aerts, J., Akune, Y., Antezana, E., Arakawa, K., Aranda, B., Baran, J., Bolleman, J., Bonnal, R. J., Buttigieg, P. L., Campbell, M. P., Chen, Y. A., Chiba, H., Cock, P. J., Cohen, K. B., Constantin, A., Duck, G., Dumontier, M., Fujisawa, T., Fujiwara, T., Goto, N., Hoehndorf, R., Igarashi, Y., Itaya, H., Ito, M., Iwasaki, W., Kalaš, M., Katoda, T., Kim, T., Kokubu, A., Komiyama, Y., Kotera, M., Laibe, C., Lapp, H., Lütteke, T., Marshall, M. S., Mori, T., Mori, H., Morita, M., Murakami, K., Nakao, M., Narimatsu, H., Nishide, H., Nishimura, Y., Nystrom-Persson, J., Ogishima, S., Okamura, Y., Okuda, S., Oshita, K., Packer, N. H., Prins, P., Ranzinger, R., Rocca-Serra, P., Sansone, S., Sawaki, H., Shin, S. H., Splendiani, A., Strozzi, F., Tadaka, S., Toukach, P., Uchiyama, I., Umezaki, M., Vos, R., Whetzel, P. L., Yamada, I., Yamasaki, C., Yamashita, R., York, W. S., Zmasek, C. M., Kawamoto, S., Takagi, T. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semantics 5(1):5 (2014).
The Fifth ACGG-DB Meeting Report: Towards an International Glycan Structure Repository.
Aoki-Kinoshita, K. F., Sawaki, H., An, H. J., Campbell, M., Cao, Q., Cummings, R., Hsu, D. K., Kato, M., Kawasaki, T., Khoo, K. H., Kim, J., Kolarich, D., Li, X., Liu, M., Matsubara, M., Okuda, S., Packer, N. H., Ranzinger, R., Shen, H., Shikanai, T., Shinmachi, D., Toukach, P., Yamada, I., Yamaguchi, Y., Yang, P., Ying, W., Yoo, J. S., Zhang, Y., Zhang, Y., Narimatsu, H. The Fifth ACGG-DB Meeting Report: Towards an International Glycan Structure Repository. Glycobiology 23(12): 1422-1424 (2013). Glycobiology
Introducing glycomics data into the Semantic Web.
Aoki-Kinoshita, K. F., Bolleman, J., Campbell, M. P., Kawano, S., Kim, J. D., Lütteke, T., Matsubara, M., Okuda, S., Ranzinger, R., Sawaki, H., Shikanai, T., Shinmachi, D., Suzuki, Y., Toukach, P., Yamada, I., Packer, N. H., Narimatsu, H. Introducing glycomics data into the Semantic Web. J. Biomed. Semantics 4(1):39 (2013).
PubMed Journal of Biomedical Semantics
Recent Efforts of Global Collaborations for Interconnecting Glycan-related Databases on the Semantic Web.
Sawaki, M., Kinoshita-Aoki, K., Yamada, I., Kawano, S., Okuda, S., Katoh, M., and Narimatsu, H. Recent Efforts of Global Collaborations for Interconnecting Glycan-related Databases on the Semantic Web. Glyco22, Dalian (2013/6).