Comparative analysis of functional diversity of environmental genomes.
Okuda, S.; Comparative analysis of functional diversity of environmental genomes. The 2011 Joint Conference of CBI & JSBi, 162, Kobe (2011/11).
In silico study on the substrate binding manner in human myo-inositol monophosphatase 2.
Fujita, S., Ohnishi, T., Okuda, S., Kobayashi, R., Fukuno, S., Furuta, D., Kikuchi, T., Yoshikawa, T., and Fujita, N.; In silico study on the substrate binding manner in human myo-inositol monophosphatase 2. J. Mol. Model. 17(10), 2559-67 (2011).
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
Katayama, T., Wilkinson, M. D., Vos, R., Kawashima, T., Kawashima, S., Nakao, M., Yamamoto, Y., Chun, H. W., Yamaguchi, A., Kawano, S., Aerts, J., Aoki-Kinoshita, K. F., Arakawa, K., Aranda, B., Bonnal, R. J., Fernández, J. M., Fujisawa, T., Gordon, P. M., Goto, N., Haider, S., Harris, T., Hatakeyama, T., Ho, I., Itoh, M., Kasprzyk, A., Kido, N., Kim, Y. J., Kinjo, A. R., Konishi, F., Kovarskaya, Y., von, Kuster, G., Labarga, A., Limviphuvadh, V., McCarthy, L., Nakamura, Y., Nam, Y., Nishida, K., Nishimura, K., Nishizawa, T., Ogishima, S., Oinn, T., Okamoto, S., Okuda, S., Ono, K., Oshita, K., Park, K. J., Putnam, N., Senger, M., Severin, J., Shigemoto, Y., Sugawara, H., Taylor, J., Trelles, O., Yamasaki, C., Yamashita, R., Satoh, N., and Takagi T. The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semantics 2:4 (2011).
PubMed Journal of Biomedical Semantics
iPath2.0: interactive pathway explorer.
Yamada, T., Letunic, I., Okuda, S., Kanehisa, M., and Bork, P. iPath2.0: interactive pathway explorer. Nucleic Acids Res. 39:W412-5 (2011).
Computational Methods for the Interpretation of Clinical MetaOmics Data: from a ‘Bag of Genes’ to Ecosystem Networks and Clinical Markers.
Raes, J,. Darzi, Y., Falony, G., Faust, K., Hildebrand, F., Lima-Mendez, G., Okuda, S.; Computational Methods for the Interpretation of Clinical MetaOmics Data: from a ‘Bag of Genes’ to Ecosystem Networks and Clinical Markers. International Human microbiome Congress, 126 Vancouver (2011/3).
ODB: a database for operon organizations, 2011 update.
Okuda, S., and Yoshizawa, A. C. ODB: a database for operon organizations, 2011 update. Nucleic Acids Res. 39:D552-5 (2011).
iPath: Interactive Pathways Explorer.
Yamada T., Letunic I., Okuda S., and Bork P.; iPath: Interactive Pathways Explorer. ECCB 2010, Ghent, G-74 (2010/9).
Direct observation and analysis of bacterial growth on an antimicrobial surface.
Yamada, H., Takahashi, N., Okuda, S., Tsuchiya, Y., and Morisaki, H. Direct observation and analysis of bacterial growth on an antimicrobial surface. Appl. Environ. Microbiol. 76(16):5409-14 (2010).
PubMed Applied and Environmental Microbiology
iPath: Interactive Pathways Explorer.
Yamada, T., Letunic, I., Okuda S., and Bork. P.; iPath: Interactive Pathways Explorer. RECOMB2010, Portugal, B-63 (2010/8).
From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for MetaOmics Analysis.
Darzi, Y., Falony, G., Faust, K., Hildebrand, F., Lima-Mendez, G., Okuda, S., and Raes, J. ; From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for MetaOmics Analysis. Human Microbiome Research Conference, 85 St Louis, Missouri (2010/8).