jPOST: Development of Japan ProteOme STandard repository/database.
Kawano, S., Moriya, Y., Okuda, S., Yamamoto, T., Matsumoto, M., Kobayashi, D., Araki, N., Yoshizawa, A. C., Tabata, T., Sugiyama, N., Goto, S., Ishihama, Y. jPOST: Development of Japan ProteOme STandard repository/database. HUPO2015, Vancouver (2015/9).
Species-function relationships shape ecological properties of the human gut microbiome.
Vieira-Silva, S., Falony, G., Lima-Mendez, G., Darzi, Y., Garcia Yunta, R., Okuda, S., Vandeputte, D., Hildebrand, F., Chaffron, S., and Raes, J. Species-function relationships shape ecological properties of the human gut microbiome. Cell Symposia: Human Immunity and the Microbiome in Health and Disease, Montreal (2015/9/29).
Utilizing the Semantic Web in GlyTouCan.
Aoki-Kinoshita, K., Aoki, P. N., Shinmachi, D., Fujita, A., Tsuchiya, S., Matsubara, M., Okuda, S., Fujita, N., Yamada, I., and Narimatsu, H. Utilizing the Semantic Web in GlyTouCan. Glyco23, Croatia (2015/9/17).
Evolutionary histories of phospho-motifs in the human genome.
Okuda, S., Yoshizaki, H. Evolutionary histories of phospho-motifs in the human genome. ISMB2015, Dublin (2015/7).
Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome.
Yoshizaki, H., Okuda, S. Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome. Gigascience 4:21 (2015).
Human T-cell leukemia virus type 1 Tax oncoprotein represses the expression of the BCL11B tumor suppressor in T-cells.
Takachi, T., Takahashi, M., Takahashi-Yoshita, M., Higuchi, M., Obata, M., Mishima, Y., Okuda, S., Tanaka, Y., Matsuoka, M., Saitoh, A., Green, P. L., Fujii, M. Human T-cell leukemia virus type 1 Tax oncoprotein represses the expression of the BCL11B tumor suppressor in T-cells. Cancer Sci. 106(4):461-5 (2015).
GlycoRDF: an ontology to standardize glycomics data in RDF.
Ranzinger, R., Aoki-Kinoshita, K. F., Campbell, M., P., Kawano, S., Lütteke, T., Okuda, S., Shinmachi, D., Shikanai, T., Sawaki, H., Toukach, P., Matsubara, M., Yamada, I., Narimatsu, H. GlycoRDF: an ontology to standardize glycomics data in RDF. Bioinformatics 31(6) 919-25 (2015).
Enhanced translocation and growth of Rhodococcus erythropolis PR4 in the alkane phase of aqueous-alkane two phase cultures were mediated by GroEL2 overexpression.
Takihara, H., Ogihara, J., Yoshida, T., Okuda, S., Nakajima, M., Iwabuchi, N., Sunairi, M. Enhanced translocation and growth of Rhodococcus erythropolis PR4 in the alkane phase of aqueous-alkane two phase cultures were mediated by GroEL2 over expression. Microbes Environ. 29(4):346-52 (2014).
Large-scale analysis of the evolutionary history of phosphorylation motifs.
Okuda, S., Yoshizaki, H. Large-scale analysis of the evolutionary history of phosphorylation motifs. ASCB/IFCB2014, Philadelphia (2014/12).
Development of an International Glycan Structure Repository.
Aoki-Kinoshita, K., Agravat, S., Aoki, N. P., Arpinar, S., Cummings, R. D., Fujita, A., Fujita, N., Hart, G. M., Haslam, S., Kawasaki, T., Matsubara, M., Moreman, K. W., Narimatsu, H., Okuda, S., Pierce, J. P., Ranzinger, R., Shinmachi, D., Solovieva, E., Suzuki, Y., Tsuchiya, S., Yamada, York, W. S., Zaia. J. Development of an International Glycan Structure Repository. SFG&JSCR2014, Honolulu (2014/11/19).