Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome.
Yoshizaki, H., and Okuda, S. Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome. Gigascience 4:21 (2015).
Human T-cell leukemia virus type 1 Tax oncoprotein represses the expression of the BCL11B tumor suppressor in T-cells.
Takachi, T., Takahashi, M., Takahashi-Yoshita, M., Higuchi, M., Obata, M., Mishima, Y., Okuda, S., Tanaka, Y., Matsuoka, M., Saitoh, A., Green, P. L., and Fujii, M. Human T-cell leukemia virus type 1 Tax oncoprotein represses the expression of the BCL11B tumor suppressor in T-cells. Cancer Sci. 106(4):461-5 (2015).
GlycoRDF: an ontology to standardize glycomics data in RDF
Ranzinger, R., Aoki-Kinoshita, K. F., Campbell, M., P., Kawano, S., Lütteke, T., Okuda, S., Shinmachi, D., Shikanai, T., Sawaki, H., Toukach, P., Matsubara, M., Yamada, I., and Narimatsu, H. GlycoRDF: an ontology to standardize glycomics data in RDF. Bioinformatics 31(6) 919-25 (2015).
Enhanced translocation and growth of Rhodococcus erythropolis PR4 in the alkane phase of aqueous-alkane two phase cultures were mediated by GroEL2 overexpression.
Takihara, H., Ogihara, J., Yoshida, T., Okuda, S., Nakajima, M., Iwabuchi, N., and Sunairi. M. Enhanced translocation and growth of Rhodococcus erythropolis PR4 in the alkane phase of aqueous-alkane two phase cultures were mediated by GroEL2 over expression. Microbes Environ. 29(4):346-52 (2014).
Large-scale analysis of the evolutionary history of phosphorylation motifs.
Okuda, S. and Yoshizaki, H. Large-scale analysis of the evolutionary history of phosphorylation motifs. ASCB/IFCB2014, Philadelphia (2014/12).
Development of an International Glycan Structure Repository.
Aoki-Kinoshita, K., Agravat, S., Aoki, N. P., Arpinar, S., Cummings, R. D., Fujita, A., Fujita, N., Hart, G. M., Haslam, S., Kawasaki, T., Matsubara, M., Moreman, K. W., Narimatsu, H., Okuda, S., Pierce, J. P., Ranzinger, R., Shinmachi, D., Solovieva, E., Suzuki, Y., Tsuchiya, S., Yamada, York, W. S., Zaia. J. Development of an International Glycan Structure Repository. SFG&JSCR2014, Honolulu (2014/11/19).
Concept of Japan Proteome Standard repository/database (jPOST).
Kawano, S., Ishihama, Y., Yamamoto, T., Okuda, S., Tomonaga, T., Matsumoto, M., Nakagami, H., Kondo, T., Ono, M., Ohtsuki, S., and Araki, N. Concept of Japan Proteome Standard repository/database (jPOST). HUPO2014, Madrid (2014/10).
Transcriptome changes for Vaucheria frigida in response to various light conditions.
Takahashi, F., Okuda, S., and Kasahara, M. Transcriptome changes for Vaucheria frigida in response to various light conditions. Photobiology2014, Córdoba Argentina (2014/9).
A web tool to infer metagenomic contents from16S rRNA sequences.
Okuda, S., and Watanabe, Y. A web tool to infer metagenomic contents from16S rRNA sequences. ISME2014, Seoul (2014/8).
Characterizatoin of protein phosphorylation in the context of evolution.
Okuda, S., and Yoshizaki, H. Characterizatoin of protein phosphorylation in the context of evolution. ISMB2014, Boston (2014/7).