p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming.
Saito, T., Ichimura, Y., Taguchi, K., Suzuki, T., Mizushima, T., Takagi, K., Hirose, Y., Nagahashi, M., Iso, T., Fukutomi, T., Ohishi, M., Endo, K., Uemura, T., Nishito, Y., Okuda, S., Obata, M., Kouno, T., Imamura, R., Tada, Y., Obata. R., Yasuda, D., Takahashi, K., Fujimura, T., Pi, J., Lee, M. S., Ueno, T., Ohe, T., Mashino, T., Wakai, T., Kojima, H., Okabe, T., Nagano, T., Motohashi, H., Waguri, S., Soga, T., Yamamoto, M., Tanaka, K., Komatsu, M. p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming. Nat. Commun. 7:12030 (2016).
Species-function relationships shape ecological properties of the human gut microbiome.
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Collecting Text Mining Resources for Glycobiology – an Application Case of PubAnnotation and PubDictionaries.
Kim, J-D., Shikanai, T., Okuda, S., Kawano, S. Collecting Text Mining Resources for Glycobiology – an Application Case of PubAnnotation and PubDictionaries. Biocuration 2016, Geneva (Switzerland) (2016/4).
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.
Moriya, Y., Yamada, T., Okuda, S., Nakagawa, Z., Kotera, M., Tokimatsu, T., Kanehisa, M., Goto, S. Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs. J. Chem. Inf. Model. 56(3):510-6 (2016)
GlyTouCan 1.0–The international glycan structure repository.
Aoki-Kinoshita, K., Agravat, S., Aoki, N. P., Arpinar, S., Cummings, R.D., Fujita, A., Fujita, N., Hart G. M., Haslam, S. M., Kawasaki, T., Matsubara, M., Moreman, K. W., Okuda, S., Pierce, M., Ranzinger, R., Shikanai, T., Shinmachi, D., Solovieva, E., Suzuki, Y., Tsuchiya, S., Yamada, I., York, W. S., Zaia, J., Narimatsu, H. GlyTouCan 1.0–The international glycan structure repository. Nucleic Acids Res. 44:D1237-42 (2016).
Novel kinase fusion transcripts found in endometrial cancer.
Tamura, R., Yoshihara, K., Yamawaki, K., Suda, K., Ishiguro, T., Adachi, S., Okuda, S., Inoue, I., Verhaak, R. G., Enomoto, T. Novel kinase fusion transcripts found in endometrial cancer. Sci. Rep. 5:18657 (2015).
Resequencing and Association Analysis of CLN8 with Autism Spectrum Disorder in a Japanese Population.
Inoue, E., Watanabe, Y., Xing, J., Kushima, I., Egawa, J., Okuda, S., Hoya, S., Okada, T., Uno, Y., Ishizuka, K., Sugimoto, A., Igeta, H., Nunokawa, A., Sugiyama, T., Ozaki, N., Someya, T. Resequencing and Association Analysis of CLN8 with Autism Spectrum Disorder in a Japanese Population. PLoS One 10(12):e0144624 (2015).
Cytotoxic Glycosylated Fatty Acid Amides from a Stelletta sp. Marine Sponge.
Peddie, V., Takada, K., Okuda, S., Ise, Y., Morii, Y., Yamawaki, N., Takatani, T., Arakawa, O., Okada, S., Matsunaga, S. Cytotoxic Glycosylated Fatty Acid Amides from a Stelletta sp. Marine Sponge. J. Nat. Prod. 78(11):2808–13 (2015).
RNA Sequencing Revealed Numerous Polyketide Synthase Genes in the Harmful Dinoflagellate Karenia mikimotoi.
Kimura, K., Okuda, S., Nakayama, K., Shikata, T., Takahashi, F., Yamaguchi, H., Skamoto, S., Yamaguchi, M., Tomaru, Y. RNA Sequencing Revealed Numerous Polyketide Synthase Genes in the Harmful Dinoflagellate Karenia mikimotoi. PLoS One 10(11):e0142731 (2015).
Proteomics data analysis workflow for accumulated LCMS files in public database.
Ishihama, Y., Tabata, T., Sugiyama, N., Goto, S., Araki, N., Matsumoto, M., Okuda, S., Kawano, S. Proteomics data analysis workflow for accumulated LCMS files in public database. HUPO2015, Vancouver (2015/9).