A systems biology approach to elucidating mechanisms underlying smog-induced airway inflammation.
Wheelock, A. M., Wheelock, C. E., Okuda, S., and Goto, S.; A systems biology approach to elucidating mechanisms underlying smog-induced airway inflammation. 8th Siena Meeting, Siena (2008/8).
KEGG Atlas mapping for global analysis of metabolic pathways.
Okuda, S., Yamada, T., Hamajima, M., Itoh, M., Katayama, T., Bork, P., Goto, S., Kanehisa, M. KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res. 36:W423-6 (2008).
Network analysis of adverse drug interactions.
Takarabe, M., Okuda, S., Itoh, M., Tokimatsu, T., Goto S., and Kanehisa, M.; Network analysis of adverse drug interactions. IBSB 2008, Berlin (2008/6).
The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.
Hashimoto, K., Yoshizawa, A. C., Okuda, S., Kuma, K., Goto, S., Kanehisa, M. The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes. J. Lipid Res. 49(1):183-91 (2008).
KEGG for linking genomes to life and the environment.
Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36:D480-4 (2008).
Pseudo-clique extraction method towards comprehensive clustering of orthologous genes in KEGG.
Nakaya, A., Katayama, T., Kawashima, S., Itoh, M., Yamanishi, Y., Okuda, S., Moriya, Y., Yoshizawa, A. C., Kanehisa, M. Pseudo-clique extraction method towards comprehensive clustering of orthologous genes in KEGG. JSBI 2007 Poster Abstracts, P060 (2007/12).
Analysis of Tissue Specific Expression Patterns of Metabolic Pathway.
Takarabe, M., Okuda, S., Itoh, M., Kanehisa, M. Analysis of Tissue Specific Expression Patterns of Metabolic Pathway. IBSB 2007 Poster Abstracts, P007 (2007/8).
KAAS: an automatic genome annotation and pathway reconstruction server.
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., Kanehisa, M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-5 (2007).
Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli.
Okuda, S., Kawashima, S., Kobayashi, K., Ogasawara, N., Kanehisa, M., Goto, S. Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli. BMC Genomics 8:48 (2007).
Analysis of Tissue Specific Expression Patterns of Isozymes.
Takarabe, M., Tsuchida, A., Fujita, M., Okuda, S., Yoshizawa, A.C., Yamada, T., Itoh, M., Goto, S., Kanehisa, M. Analysis of Tissue Specific Expression Patterns of Isozymes. GIW 2006 Poster Abstracts, P042 (2006/12).