Analysis of bacterial growth at various distances from an antimicrobial surface.
Nunose, S., Iwai, R., Okuda, S., Tsuchiya, Y., Morisaki, H. Analysis of bacterial growth at various distances from an antimicrobial surface. Adv. Biosci. Biotechnol. 4:563-569 (2013).
Advances in Bioscience and Biotechnology
The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics.
Aoki-Kinoshita, K. F., Sawaki, H., An, H. J., Cho, J. W., Hsu, D., Kato, M., Kawano, S., Kawasaki, T., Khoo, K. H., Kim, J., Kim, J. D., Li, X., Lütteke, T., Okuda, S., Packer, N. H., Paulson, J. C., Raman, R., Ranzinger, R., Shen, H., Shikanai, T., Yamada, I., Yang, P., Yamaguchi, Y., Ying, W., Yoo, J. S., Zhang, Y., Narimatsu, H. The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics. Glycobiology 23(2):144-6 (2013).
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.
Nakaya, A., Katayama, T., Itoh, M., Hiranuka, K., Kawashima, S., Moriya, Y., Okuda, S., Tanaka, M., Tokimatsu, T., Yamanishi, Y., Yoshizawa, A. C., Kanehisa, M., Goto, S. KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Res. 41: D353-7 (2013).
Virtual metagenome reconstruction from 16S rRNA gene sequences.
Okuda, S., Tsuchiya, T., Kiriyama, C., Itoh, M., Morisaki H. Virtual metagenome reconstruction from 16S rRNA gene sequences. Nat. Commun. 3:1203 (2012).
A metagenome-wide association study of gut microbiota in type 2 diabetes.
Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., Peng, Y., Zhang, D., Jie, Z., Wu, W., Qin, Y., Xue, W., Li, J., Han, L., Lu, D., Wu, P., Dai, Y., Sun, X., Li, Z., Tang, A., Zhong, S., Li, X., Chen, W., Xu, R., Wang, M., Feng, Q., Gong, M., Yu, J., Zhang, Y., Zhang, M., Hansen, T., Sanchez, G., Raes, J., Falony, G., Okuda, S., Almeida, M., LeChatelier, E., Renault, P., Pons, N., Batto, J. M., Zhang, Z., Chen, H., Yang, R., Zheng, W., Li, S., Yang, H., Wang, J., Ehrlich, S. D., Nielsen, R., Pedersen, O., Kristiansen, K., Wang, J. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490(7418):55-60 (2012).
Meta-transcriptomic analysis of microbial community associated with a soda lake in Khovsgol, Mongolia.
Hamamura, N., Huang, H., Okuda, S., Damdinsuren, N. Meta-transcriptomic analysis of microbial community associated with a soda lake in Khovsgol, Mongolia. ISME14, Copenhagen (2012/8).
Reconstruction of metagenomes from 16S rRNA gene sequence in biofilm formation process.
Okuda, S., Tsuchiya, Y., Kiriyama, C., Itoh, M., Morisaki, H. Reconstruction of metagenomes from 16S rRNA gene sequence in biofilm formation process. ISME14, Copenhagen (2012/8).
Evolutionary analysis of the phosphorylation signaling reveals functionally conserved motifs.
Yoshizaki, H., Okuda, S. Evolutionary analysis of the phosphorylation signaling reveals functionally conserved motifs. ASCB annual meeting 2012, 2788, Denver (2011/12).
Comparative analysis of functional diversity of environmental genomes.
Okuda, S. Comparative analysis of functional diversity of environmental genomes. The 2011 Joint Conference of CBI & JSBi, 162, Kobe (2011/11).
In silico study on the substrate binding manner in human myo-inositol monophosphatase 2.
Fujita, S., Ohnishi, T., Okuda, S., Kobayashi, R., Fukuno, S., Furuta, D., Kikuchi, T., Yoshikawa, T., Fujita, N. In silico study on the substrate binding manner in human myo-inositol monophosphatase 2. J. Mol. Model. 17(10), 2559-67 (2011).