Publications

• • Talk

  Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.

  Tanaka, M., Yamada, T., Itoh, M., Okuda, S., Goto S., and Kanehisa, M.; Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. IBSB 2006, Boston (2006/7).
• • Paper

  ODB: a database of operons accumulating known operons across multiple genomes.

  Okuda, S., Katayama, T., Kawashima, S., Goto, S., Kanehisa, M. ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Res. 34: D358-62 (2006).

  PubMed Nucleic Acids Research
• • Poster

  KAAS: KEGG Automatic Annotation Server.

  Moriya, Y., Itoh, M., Okuda, S., Kanehisa, M. KAAS: KEGG Automatic Annotation Server. GIW 2005 Poster Abstracts, P005 (2005/12).
• • Poster

  Analysis of the bacterial mRNAs recognized by RNA-binding proteins and compounds.

  Muto, A., Okuda, S., Hattori, M., Kanehisa, M. Analysis of the bacterial mRNAs recognized by RNA-binding proteins and compounds. IBSB 2005 Poster Abstracts, P14 (2005/8).
• • Talk

  Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli

  Okuda, S., Kawashima, S., Goto, S., Kanehisa, M. Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. IBSB 2005, Berlin (2005/8).
• • Paper

  Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.

  Okuda, S., Kawashima, S., Goto, S., and Kanehisa, M.; Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. Genome Inform. 16(1): 116-24 (2005).

  PubMed Genome Informatics
• • Poster

  Determining the Evolutionary direction of Protein Domain-Fusion Using Genomic Fusion Flux.

  Hu, Z., Wu, J., Okuda, S., Niu, T., Shakhnovich, B., Delisi, C. Determining the Evolutionary direction of Protein Domain-Fusion Using Genomic Fusion Flux. ISMB 2005 Poster Abstracts, D-24 (2005/7).
• • Poster

  Automatic generation of KEGG OC (Ortholog Cluster) and its assignment to draft genomes.

  Moriya, Y., Katayama, T., Nakaya, A., Itoh, M., Yoshizawa, A.C., Okuda, S., Kanehisa, M. Automatic generation of KEGG OC (Ortholog Cluster) and its assignment to draft genomes. GIW 2004 Poster Abstracts, P049 (2004/12).
• • Poster

  Functional categorization of multiple genomes using KEGG OC in the genome indices.

  Okuda, S., Yoshizawa, A.C., Moriya, Y., Itoh, M., Katayama, T., Goto, S., Kanehisa, M. Functional categorization of multiple genomes using KEGG OC in the genome indices. GIW 2004 Poster Abstracts, P050 (2004/12).
• • Poster

  Analysis of the bacterial sequences recognized by RNA-binding proteins and compounds.

  Muto, A., Yoshizawa, A.C., Okuda, S., Itoh, M., Hattori, M., Kanehisa, M. Analysis of the bacterial sequences recognized by RNA-binding proteins and compounds. GIW 2004 Poster Abstracts, P093 (2004/12).