Publications

• • Paper

  Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli.

  Okuda, S., Kawashima, S., Kobayashi, K., Ogasawara, N., Kanehisa, M., Goto, S. Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli. BMC Genomics 8:48 (2007).

  PubMed BMC Genomics
• • Poster

  Analysis of Tissue Specific Expression Patterns of Isozymes.

  Takarabe, M., Tsuchida, A., Fujita, M., Okuda, S., Yoshizawa, A.C., Yamada, T., Itoh, M., Goto, S., Kanehisa, M. Analysis of Tissue Specific Expression Patterns of Isozymes. GIW 2006 Poster Abstracts, P042 (2006/12).
• • Paper

  Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.

  Tanaka, M., Yamada, T., Itoh, M., Okuda, S., Goto S., Kanehisa, M. Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. Genome Inform. 17(1):230-9 (2006).

  PubMed Genome Informatics
• • Paper

  Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.

  Yoshizawa, A.C., Kawashima, S., Okuda, S., Fujita, M., Itoh, M., Moriya, Y., Hattori, M., Kanehisa, M. Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic. Traffic 7(8): 1104-18 (2006).

  PubMed Traffic
• • Poster

  Construction of the drug substructure library from the KEGG DRUG database.

  Shigemizu, D., Okuda, S., Araki , M., Goto, S., Kanehisa, M. Construction of the drug substructure library from the KEGG DRUG database. IBSB 2006, Boston (2006/7).
• • Talk

  Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.

  Tanaka, M., Yamada, T., Itoh, M., Okuda, S., Goto S., and Kanehisa, M.; Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. IBSB 2006, Boston (2006/7).
• • Paper

  ODB: a database of operons accumulating known operons across multiple genomes.

  Okuda, S., Katayama, T., Kawashima, S., Goto, S., Kanehisa, M. ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Res. 34: D358-62 (2006).

  PubMed Nucleic Acids Research
• • Poster

  KAAS: KEGG Automatic Annotation Server.

  Moriya, Y., Itoh, M., Okuda, S., Kanehisa, M. KAAS: KEGG Automatic Annotation Server. GIW 2005 Poster Abstracts, P005 (2005/12).
• • Poster

  Analysis of the bacterial mRNAs recognized by RNA-binding proteins and compounds.

  Muto, A., Okuda, S., Hattori, M., Kanehisa, M. Analysis of the bacterial mRNAs recognized by RNA-binding proteins and compounds. IBSB 2005 Poster Abstracts, P14 (2005/8).
• • Talk

  Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli

  Okuda, S., Kawashima, S., Goto, S., Kanehisa, M. Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. IBSB 2005, Berlin (2005/8).