Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.
Okuda, S., Kawashima, S., Goto, S., and Kanehisa, M.; Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. Genome Inform. 16(1): 116-24 (2005).
Determining the Evolutionary direction of Protein Domain-Fusion Using Genomic Fusion Flux.
Hu, Z., Wu, J., Okuda, S., Niu, T., Shakhnovich, B., Delisi, C. Determining the Evolutionary direction of Protein Domain-Fusion Using Genomic Fusion Flux. ISMB 2005 Poster Abstracts, D-24 (2005/7).
Automatic generation of KEGG OC (Ortholog Cluster) and its assignment to draft genomes.
Moriya, Y., Katayama, T., Nakaya, A., Itoh, M., Yoshizawa, A.C., Okuda, S., Kanehisa, M. Automatic generation of KEGG OC (Ortholog Cluster) and its assignment to draft genomes. GIW 2004 Poster Abstracts, P049 (2004/12).
Functional categorization of multiple genomes using KEGG OC in the genome indices.
Okuda, S., Yoshizawa, A.C., Moriya, Y., Itoh, M., Katayama, T., Goto, S., Kanehisa, M. Functional categorization of multiple genomes using KEGG OC in the genome indices. GIW 2004 Poster Abstracts, P050 (2004/12).
Analysis of the bacterial sequences recognized by RNA-binding proteins and compounds.
Muto, A., Yoshizawa, A.C., Okuda, S., Itoh, M., Hattori, M., Kanehisa, M. Analysis of the bacterial sequences recognized by RNA-binding proteins and compounds. GIW 2004 Poster Abstracts, P093 (2004/12).
Functional classification of coiled-coil proteins in multiple genomes.
Yoshizawa, A.C., Okuda, S., Moriya, Y., Itoh, M., Katayama, T., Kawano, S., Okamoto, S., Kawashima, S., Kanehisa, M. Functional classification of coiled-coil proteins in multiple genomes. GIW 2004 Poster Abstracts, P157 (2004/12).
Integration of biological features of multiple genomes: the construction of “Genome Indices” database.
Okuda, S., Yoshizawa, A.C., Moriya, Y., Itoh, M., Goto, S., Kanehisa, M. Integration of biological features of multiple genomes: the construction of “Genome Indices” database. IBSB 2004 Poster Abstracts, 40-41 (2004/6).
Prediction and Comparison of Coiled-Coil Proteins in Multiple Genomes.
Yoshizawa, A.C., Okuda, S., Itoh, M., Katayama, T., Kawashima, S., Kanehisa, M. Prediction and Comparison of Coiled-Coil Proteins in Multiple Genomes. IBSB 2004 Poster Abstracts, 77-78 (2004/6).
Analysis of domain combinations in eukaryotic genomes.
Itoh, M., Yoshizawa, A.C., Okuda, S., Goto, S., Kanehisa, M. Analysis of domain combinations in eukaryotic genomes. Genome Informatics 14, 434-435 (2003/12).
Comprehensive survey of intracellular transport system-related proteins in complete genomes and draft genomes.
Yoshizawa, A.C., Itoh, M., Okuda, S., Limviphuvadh, V., Sakiyama, T., Kawashima, S., Kanehisa, M. Comprehensive survey of intracellular transport system-related proteins in complete genomes and draft genomes. Genome Informatics 14, 436-437 (2003/12).