Extraction and analysis of chemical modification patterns in drug development.
Shigemizu, D., Araki, M., Okuda, S., Goto, S., Kanehisa, M. Extraction and analysis of chemical modification patterns in drug development. J. Chem. Inf. Model. 49(4):1122-9 (2009).
Network analysis of adverse drug interactions.
Takarabe, M., Okuda, S., Itoh, M., Tokimatsu, T., Goto S., Kanehisa, M. Network analysis of adverse drug interactions. Genome Inform. 20:252-9 (2008).
A systems biology approach to elucidating mechanisms underlying smog-induced airway inflammation.
Wheelock, A. M., Wheelock, C. E., Okuda, S., and Goto, S.; A systems biology approach to elucidating mechanisms underlying smog-induced airway inflammation. 8th Siena Meeting, Siena (2008/8).
KEGG Atlas mapping for global analysis of metabolic pathways.
Okuda, S., Yamada, T., Hamajima, M., Itoh, M., Katayama, T., Bork, P., Goto, S., Kanehisa, M. KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res. 36:W423-6 (2008).
Network analysis of adverse drug interactions.
Takarabe, M., Okuda, S., Itoh, M., Tokimatsu, T., Goto S., and Kanehisa, M.; Network analysis of adverse drug interactions. IBSB 2008, Berlin (2008/6).
The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.
Hashimoto, K., Yoshizawa, A. C., Okuda, S., Kuma, K., Goto, S., Kanehisa, M. The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes. J. Lipid Res. 49(1):183-91 (2008).
KEGG for linking genomes to life and the environment.
Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36:D480-4 (2008).
Pseudo-clique extraction method towards comprehensive clustering of orthologous genes in KEGG.
Nakaya, A., Katayama, T., Kawashima, S., Itoh, M., Yamanishi, Y., Okuda, S., Moriya, Y., Yoshizawa, A. C., Kanehisa, M. Pseudo-clique extraction method towards comprehensive clustering of orthologous genes in KEGG. JSBI 2007 Poster Abstracts, P060 (2007/12).
Analysis of Tissue Specific Expression Patterns of Metabolic Pathway.
Takarabe, M., Okuda, S., Itoh, M., Kanehisa, M. Analysis of Tissue Specific Expression Patterns of Metabolic Pathway. IBSB 2007 Poster Abstracts, P007 (2007/8).
KAAS: an automatic genome annotation and pathway reconstruction server.
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., Kanehisa, M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-5 (2007).