Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.
Tanaka, M., Yamada, T., Itoh, M., Okuda, S., Goto S., Kanehisa, M. Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. Genome Inform. 17(1):230-9 (2006).
Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.
Yoshizawa, A.C., Kawashima, S., Okuda, S., Fujita, M., Itoh, M., Moriya, Y., Hattori, M., Kanehisa, M. Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic. Traffic 7(8): 1104-18 (2006).
Construction of the drug substructure library from the KEGG DRUG database.
Shigemizu, D., Okuda, S., Araki , M., Goto, S., Kanehisa, M. Construction of the drug substructure library from the KEGG DRUG database. IBSB 2006, Boston (2006/7).
Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.
Tanaka, M., Yamada, T., Itoh, M., Okuda, S., Goto S., and Kanehisa, M.; Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. IBSB 2006, Boston (2006/7).
ODB: a database of operons accumulating known operons across multiple genomes.
Okuda, S., Katayama, T., Kawashima, S., Goto, S., Kanehisa, M. ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Res. 34: D358-62 (2006).
KAAS: KEGG Automatic Annotation Server.
Moriya, Y., Itoh, M., Okuda, S., Kanehisa, M. KAAS: KEGG Automatic Annotation Server. GIW 2005 Poster Abstracts, P005 (2005/12).
Analysis of the bacterial mRNAs recognized by RNA-binding proteins and compounds.
Muto, A., Okuda, S., Hattori, M., Kanehisa, M. Analysis of the bacterial mRNAs recognized by RNA-binding proteins and compounds. IBSB 2005 Poster Abstracts, P14 (2005/8).
Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli
Okuda, S., Kawashima, S., Goto, S., Kanehisa, M. Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. IBSB 2005, Berlin (2005/8).
Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.
Okuda, S., Kawashima, S., Goto, S., and Kanehisa, M.; Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. Genome Inform. 16(1): 116-24 (2005).
Determining the Evolutionary direction of Protein Domain-Fusion Using Genomic Fusion Flux.
Hu, Z., Wu, J., Okuda, S., Niu, T., Shakhnovich, B., Delisi, C. Determining the Evolutionary direction of Protein Domain-Fusion Using Genomic Fusion Flux. ISMB 2005 Poster Abstracts, D-24 (2005/7).