Meta-transcriptomic analysis of microbial community associated with a soda lake in Khovsgol, Mongolia.
Hamamura, N., Huang, H., Okuda, S., Damdinsuren, N. Meta-transcriptomic analysis of microbial community associated with a soda lake in Khovsgol, Mongolia. ISME14, Copenhagen (2012/8).
Reconstruction of metagenomes from 16S rRNA gene sequence in biofilm formation process.
Okuda, S., Tsuchiya, Y., Kiriyama, C., Itoh, M., Morisaki, H. Reconstruction of metagenomes from 16S rRNA gene sequence in biofilm formation process. ISME14, Copenhagen (2012/8).
Evolutionary analysis of the phosphorylation signaling reveals functionally conserved motifs.
Yoshizaki, H., Okuda, S. Evolutionary analysis of the phosphorylation signaling reveals functionally conserved motifs. ASCB annual meeting 2012, 2788, Denver (2011/12).
Comparative analysis of functional diversity of environmental genomes.
Okuda, S. Comparative analysis of functional diversity of environmental genomes. The 2011 Joint Conference of CBI & JSBi, 162, Kobe (2011/11).
In silico study on the substrate binding manner in human myo-inositol monophosphatase 2.
Fujita, S., Ohnishi, T., Okuda, S., Kobayashi, R., Fukuno, S., Furuta, D., Kikuchi, T., Yoshikawa, T., Fujita, N. In silico study on the substrate binding manner in human myo-inositol monophosphatase 2. J. Mol. Model. 17(10), 2559-67 (2011).
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
Katayama, T., Wilkinson, M. D., Vos, R., Kawashima, T., Kawashima, S., Nakao, M., Yamamoto, Y., Chun, H. W., Yamaguchi, A., Kawano, S., Aerts, J., Aoki-Kinoshita, K. F., Arakawa, K., Aranda, B., Bonnal, R. J., Fernández, J. M., Fujisawa, T., Gordon, P. M., Goto, N., Haider, S., Harris, T., Hatakeyama, T., Ho, I., Itoh, M., Kasprzyk, A., Kido, N., Kim, Y. J., Kinjo, A. R., Konishi, F., Kovarskaya, Y., von, Kuster, G., Labarga, A., Limviphuvadh, V., McCarthy, L., Nakamura, Y., Nam, Y., Nishida, K., Nishimura, K., Nishizawa, T., Ogishima, S., Oinn, T., Okamoto, S., Okuda, S., Ono, K., Oshita, K., Park, K. J., Putnam, N., Senger, M., Severin, J., Shigemoto, Y., Sugawara, H., Taylor, J., Trelles, O., Yamasaki, C., Yamashita, R., Satoh, N., Takagi T. The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semantics 2:4 (2011).
PubMed Journal of Biomedical Semantics
iPath2.0: interactive pathway explorer.
Yamada, T., Letunic, I., Okuda, S., Kanehisa, M., Bork, P. iPath2.0: interactive pathway explorer. Nucleic Acids Res. 39:W412-5 (2011).
Computational Methods for the Interpretation of Clinical MetaOmics Data: from a ‘Bag of Genes’ to Ecosystem Networks and Clinical Markers.
Raes, J,. Darzi, Y., Falony, G., Faust, K., Hildebrand, F., Lima-Mendez, G., Okuda, S. Computational Methods for the Interpretation of Clinical MetaOmics Data: from a ‘Bag of Genes’ to Ecosystem Networks and Clinical Markers. International Human microbiome Congress, 126 Vancouver (2011/3).
ODB: a database for operon organizations, 2011 update.
Okuda, S., Yoshizawa, A. C. ODB: a database for operon organizations, 2011 update. Nucleic Acids Res. 39:D552-5 (2011).
iPath: Interactive Pathways Explorer.
Yamada, T., Letunic, I., Okuda, S., Bork, P. iPath: Interactive Pathways Explorer. ECCB 2010, Ghent, G-74 (2010/9).