Publications

• • Paper

  Direct observation and analysis of bacterial growth on an antimicrobial surface.

  Yamada, H., Takahashi, N., Okuda, S., Tsuchiya, Y., Morisaki, H. Direct observation and analysis of bacterial growth on an antimicrobial surface. Appl. Environ. Microbiol. 76(16):5409-14 (2010).

  PubMed Applied and Environmental Microbiology

   

   

   
• • Poster

  iPath: Interactive Pathways Explorer.

  Yamada, T., Letunic, I., Okuda, S., Bork, P. iPath: Interactive Pathways Explorer. RECOMB2010, Portugal, B-63 (2010/8).
• • Poster

  From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for Meta­Omics Analysis.

  Darzi, Y., Falony, G., Faust, K., Hildebrand, F., Lima-Mendez, G., Okuda, S., Raes, J. From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for Meta­Omics Analysis. Human Microbiome Research Conference, 85 St Louis, Missouri (2010/8).
• • Talk

  From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for Meta­Omics Analysis.

  Darzi, Y., Falony, G., Faust, K., Hildebrand, F., Lima-Mendez, G., Okuda, S., and Raes, J. ; From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for Meta­Omics Analysis. Human Microbiome Research Conference, St. Louis (2010/8).
• • Paper

  Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.

  Hashimoto, K., Tokimatsu, T., Kawano, S., Yoshizawa, A. C., Okuda, S., Goto, S., Kanehisa, M. Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans. Carbohydr. Res. 344(7):881-7 (2009).

  PubMed Carbohydrate Research

   

   
• • Paper

  Extraction and analysis of chemical modification patterns in drug development.

  Shigemizu, D., Araki, M., Okuda, S., Goto, S., Kanehisa, M. Extraction and analysis of chemical modification patterns in drug development. J. Chem. Inf. Model. 49(4):1122-9 (2009).

  PubMed Journal of Chemical Information and Modeling
• • Paper

  Network analysis of adverse drug interactions.

  Takarabe, M., Okuda, S., Itoh, M., Tokimatsu, T., Goto S., Kanehisa, M. Network analysis of adverse drug interactions. Genome Inform. 20:252-9 (2008).

  PubMed Genome Informatics
• • Talk

  A systems biology approach to elucidating mechanisms underlying smog-induced airway inflammation.

  Wheelock, A. M., Wheelock, C. E., Okuda, S., and Goto, S.; A systems biology approach to elucidating mechanisms underlying smog-induced airway inflammation. 8th Siena Meeting, Siena (2008/8).
• • Paper

  KEGG Atlas mapping for global analysis of metabolic pathways.

  Okuda, S., Yamada, T., Hamajima, M., Itoh, M., Katayama, T., Bork, P., Goto, S., Kanehisa, M. KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res. 36:W423-6 (2008). 

  PubMed Nucleic Acids Research
• • Talk

  Network analysis of adverse drug interactions.

  Takarabe, M., Okuda, S., Itoh, M., Tokimatsu, T., Goto S., and Kanehisa, M.; Network analysis of adverse drug interactions. IBSB 2008, Berlin (2008/6).