The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.
Hashimoto, K., Yoshizawa, A. C., Okuda, S., Kuma, K., Goto, S., and Kanehisa, M. The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes. J. Lipid Res. 49(1):183-91 (2008).
KEGG for linking genomes to life and the environment.
Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., and Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36:D480-4 (2008).
Pseudo-clique extraction method towards comprehensive clustering of orthologous genes in KEGG.
Nakaya, A., Katayama, T., Kawashima, S., Itoh, M., Yamanishi, Y., Okuda, S., Moriya, Y., Yoshizawa, A. C., and Kanehisa, M.; Pseudo-clique extraction method towards comprehensive clustering of orthologous genes in KEGG. JSBI 2007 Poster Abstracts, P060 (2007/12).
Analysis of Tissue Specific Expression Patterns of Metabolic Pathway.
Takarabe, M., Okuda, S., Itoh, M., and Kanehisa, M.; Analysis of Tissue Specific Expression Patterns of Metabolic Pathway. IBSB 2007 Poster Abstracts, P007 (2007/8).
KAAS: an automatic genome annotation and pathway reconstruction server.
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., and Kanehisa, M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-5 (2007).
Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli.
Okuda, S., Kawashima, S., Kobayashi, K., Ogasawara, N., Kanehisa, M., and Goto, S. Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli. BMC Genomics 8:48 (2007).
Analysis of Tissue Specific Expression Patterns of Isozymes.
Takarabe, M., Tsuchida, A., Fujita, M., Okuda, S., Yoshizawa, A.C., Yamada, T., Itoh, M., Goto, S., and Kanehisa, M.; Analysis of Tissue Specific Expression Patterns of Isozymes. GIW 2006 Poster Abstracts, P042 (2006/12).
Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.
Tanaka, M., Yamada, T., Itoh, M., Okuda, S., Goto S., and Kanehisa, M. Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. Genome Inform. 17(1):230-9 (2006).
Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.
Yoshizawa, A.C., Kawashima, S., Okuda, S., Fujita, M., Itoh, M., Moriya, Y., Hattori, M., and Kanehisa, M.; Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic. Traffic 7(8): 1104-18 (2006).
Construction of the drug substructure library from the KEGG DRUG database.
Shigemizu, D., Okuda, S., Araki , M., Goto, S., and Kanehisa M.; Construction of the drug substructure library from the KEGG DRUG database. IBSB 2006, Boston (2006/7).