Functional glyco-metagenomics elucidates the role of glycan-related genes in environments.
Takihara, H., Miura, N., Aoki-Kinoshita, K. F., Okuda, S. Functional glyco-metagenomics elucidates the role of glycan-related genes in environments. BMC Bioinformatics 22(1):505(2021).
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data.
Watanabe, Y., Aoki-Kinoshita, K. F., Ishihama, Y., Okuda, S. GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. Nucleic Acids Res. 49(D1):D1523-D1528(2021).
The GlyCosmos portal as a partner in the GlySpace Alliance to provide access to integrated glycan-related data resources.
Yamada, I., Shiota, M., Shinmachi, D., Ono, T., Tsuchiya, S., Matsubara, M., Hosoda, M., Fujita, A., Aoki, N. P., Watanabe, Y., Fujita, N., Angata, K., Kaji, H., Narimatsu, H., Okuda, S., Aoki-Kinoshita, K. F. The GlyCosmos portal as a partner in the GlySpace Alliance to provide access to integrated glycan-related data resources. SFG2020, Virtual (2020/11/10).
The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences.
Yamada, I., Shiota, M., Shinmachi, D., Ono, T., Tsuchiya, S., Hosoda, M., Fujita, A., Aoki, N. P., Watanabe, Y., Fujita, N., Angata, K., Kaji, H., Narimatsu, H., Okuda, S., Aoki-Kinoshita, K. F. The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences. Nat. Methods 17(7):649-650(2020).
Towards a standardized bioinformatics infrastructure for N- and O- glycomics.
Rojas-Macias, M. A., Mariethoz, J., Andersson, P., Jin, C., Venkatakrishnan, V., Aoki, N. P., Shinmachi, D., Ashwood, C., Madunic, K., Zhang, T., Miller, R. L., Horlacher, O., Struwe, W. B., Watanabe, Y., Okuda, S., Levander, F., Kolarich, D., Rudd, P. M., Wuhrer, M., Kettner, C., Packer, N. H., Aoki-Kinoshita, K. F., Lisacek, F., Karlsson, N. G. Towards a standardized bioinformatics infrastructure for N- and O- glycomics. Nat. commun. 10(1):3275 (2019).
Semantic Web Technologies to Integrate Life Science Data through GlyTouCan.
Yamada, I, Shinmachi, D., Aoki, N., Watanabe, Y., Okuda S., Aoki-Kinoshita, K. Semantic Web Technologies to Integrate Life Science Data through GlyTouCan. ISMB2018, Chicago (2018/7/6).
New Filtering Functionality in GlyTouCan, The Glycan Repository.
Aoki, N. P., Aoki-Kinoshita, K. F., Shinmachi, D., Yamada, I., Tsuchiya, S., Matsubara, M., Okuda, S., Fujita, N., Suzuki, Y., Fujita, A., Solovieva, E., Shikanai, T., Kawasaki, T., Narimatsu, H. New Filtering Functionality in GlyTouCan, The Glycan Repository. ACGG2016 (2016/10/13).
Integrating Life Science Database with Semantic Web Technologies.
Shinmachi, D., Aoki-Kinoshita, K. F., Aoki, N. P., Yamada, I., Tsuchiya, S., Matsubara, M., Okuda, S., Fujita, N., Suzuki, Y., Fujita, A., Solovieva, E., Shikanai, T., Kawasaki, T., Narimatsu, H. Integrating Life Science Database with Semantic Web Technologies. ACGG2016 (2016/10/13).
Collecting Text Mining Resources for Glycobiology – an Application Case of PubAnnotation and PubDictionaries.
Kim, J-D., Shikanai, T., Okuda, S., Kawano, S. Collecting Text Mining Resources for Glycobiology – an Application Case of PubAnnotation and PubDictionaries. Biocuration 2016, Geneva (Switzerland) (2016/4).
GlyTouCan 1.0–The international glycan structure repository.
Aoki-Kinoshita, K., Agravat, S., Aoki, N. P., Arpinar, S., Cummings, R.D., Fujita, A., Fujita, N., Hart G. M., Haslam, S. M., Kawasaki, T., Matsubara, M., Moreman, K. W., Okuda, S., Pierce, M., Ranzinger, R., Shikanai, T., Shinmachi, D., Solovieva, E., Suzuki, Y., Tsuchiya, S., Yamada, I., York, W. S., Zaia, J., Narimatsu, H. GlyTouCan 1.0–The international glycan structure repository. Nucleic Acids Res. 44:D1237-42 (2016).