Utilizing the Semantic Web in GlyTouCan.
Aoki-Kinoshita, K., Aoki, P. N., Shinmachi, D., Fujita, A., Tsuchiya, S., Matsubara, M., Okuda, S., Fujita, N., Yamada, I., and Narimatsu, H. Utilizing the Semantic Web in GlyTouCan. Glyco23, Croatia (2015/9/17).
GlycoRDF: an ontology to standardize glycomics data in RDF.
Ranzinger, R., Aoki-Kinoshita, K. F., Campbell, M., P., Kawano, S., Lütteke, T., Okuda, S., Shinmachi, D., Shikanai, T., Sawaki, H., Toukach, P., Matsubara, M., Yamada, I., Narimatsu, H. GlycoRDF: an ontology to standardize glycomics data in RDF. Bioinformatics 31(6) 919-25 (2015).
Development of an International Glycan Structure Repository.
Aoki-Kinoshita, K., Agravat, S., Aoki, N. P., Arpinar, S., Cummings, R. D., Fujita, A., Fujita, N., Hart, G. M., Haslam, S., Kawasaki, T., Matsubara, M., Moreman, K. W., Narimatsu, H., Okuda, S., Pierce, J. P., Ranzinger, R., Shinmachi, D., Solovieva, E., Suzuki, Y., Tsuchiya, S., Yamada, York, W. S., Zaia. J. Development of an International Glycan Structure Repository. SFG&JSCR2014, Honolulu (2014/11/19).
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
Katayama, T., Wilkinson M. D., Aoki-Kinoshita, K. F., Kawashima, S., Yamamoto, Y., Yamaguchi, A., Okamoto, S., Kawano, S., Kim, J. D., Wang, Y., Wu, H., Kano, Y., Ono, H., Bono, H., Kocbek, S., Aerts, J., Akune, Y., Antezana, E., Arakawa, K., Aranda, B., Baran, J., Bolleman, J., Bonnal, R. J., Buttigieg, P. L., Campbell, M. P., Chen, Y. A., Chiba, H., Cock, P. J., Cohen, K. B., Constantin, A., Duck, G., Dumontier, M., Fujisawa, T., Fujiwara, T., Goto, N., Hoehndorf, R., Igarashi, Y., Itaya, H., Ito, M., Iwasaki, W., Kalaš, M., Katoda, T., Kim, T., Kokubu, A., Komiyama, Y., Kotera, M., Laibe, C., Lapp, H., Lütteke, T., Marshall, M. S., Mori, T., Mori, H., Morita, M., Murakami, K., Nakao, M., Narimatsu, H., Nishide, H., Nishimura, Y., Nystrom-Persson, J., Ogishima, S., Okamura, Y., Okuda, S., Oshita, K., Packer, N. H., Prins, P., Ranzinger, R., Rocca-Serra, P., Sansone, S., Sawaki, H., Shin, S. H., Splendiani, A., Strozzi, F., Tadaka, S., Toukach, P., Uchiyama, I., Umezaki, M., Vos, R., Whetzel, P. L., Yamada, I., Yamasaki, C., Yamashita, R., York, W. S., Zmasek, C. M., Kawamoto, S., Takagi, T. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semantics 5(1):5 (2014).
The Fifth ACGG-DB Meeting Report: Towards an International Glycan Structure Repository.
Aoki-Kinoshita, K. F., Sawaki, H., An, H. J., Campbell, M., Cao, Q., Cummings, R., Hsu, D. K., Kato, M., Kawasaki, T., Khoo, K. H., Kim, J., Kolarich, D., Li, X., Liu, M., Matsubara, M., Okuda, S., Packer, N. H., Ranzinger, R., Shen, H., Shikanai, T., Shinmachi, D., Toukach, P., Yamada, I., Yamaguchi, Y., Yang, P., Ying, W., Yoo, J. S., Zhang, Y., Zhang, Y., Narimatsu, H. The Fifth ACGG-DB Meeting Report: Towards an International Glycan Structure Repository. Glycobiology 23(12): 1422-1424 (2013). Glycobiology
Introducing glycomics data into the Semantic Web.
Aoki-Kinoshita, K. F., Bolleman, J., Campbell, M. P., Kawano, S., Kim, J. D., Lütteke, T., Matsubara, M., Okuda, S., Ranzinger, R., Sawaki, H., Shikanai, T., Shinmachi, D., Suzuki, Y., Toukach, P., Yamada, I., Packer, N. H., Narimatsu, H. Introducing glycomics data into the Semantic Web. J. Biomed. Semantics 4(1):39 (2013).
PubMed Journal of Biomedical Semantics
Recent Efforts of Global Collaborations for Interconnecting Glycan-related Databases on the Semantic Web.
Sawaki, M., Kinoshita-Aoki, K., Yamada, I., Kawano, S., Okuda, S., Katoh, M., and Narimatsu, H. Recent Efforts of Global Collaborations for Interconnecting Glycan-related Databases on the Semantic Web. Glyco22, Dalian (2013/6).
The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics.
Aoki-Kinoshita, K. F., Sawaki, H., An, H. J., Cho, J. W., Hsu, D., Kato, M., Kawano, S., Kawasaki, T., Khoo, K. H., Kim, J., Kim, J. D., Li, X., Lütteke, T., Okuda, S., Packer, N. H., Paulson, J. C., Raman, R., Ranzinger, R., Shen, H., Shikanai, T., Yamada, I., Yang, P., Yamaguchi, Y., Ying, W., Yoo, J. S., Zhang, Y., Narimatsu, H. The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics. Glycobiology 23(2):144-6 (2013).