Network analysis of proteogenomics data in lung cancer cell lines.
Watanabe, Y., Ling, Y., Uemura, H., Yoshizawa, A. C., Ishihama, Y., Okuda, S. Network analysis of proteogenomics data in lung cancer cell lines. HUPO2019, Adelaide (2019/9/17).
Promotion of proteomic data sharing through a specialized data journal.
Kawano, S., Okuda, S., Matsumoto, M., Ishihama, Y. Promotion of proteomic data sharing through a specialized data journal. HUPO2019, Adelaide (2019/9/16).
The Human Gut Microbiome is Structured to Optimize Molecular Interaction Networks.
Ling, Y., Watanabe, Y., Okuda, S. The Human Gut Microbiome is Structured to Optimize Molecular Interaction Networks. Comput. Struct. Biotechnol. J. 17:1040-1046 (2019).
PubMed Computational and Structural Biotechnology Journal
Genome-wide analysis of mutational impact on post translational modification.
Ling, Y., Yoshizaki, H., Okuda, S. Genome-wide analysis of mutational impact on post translational modification. ISMB2019, Bazel (2019/7/23).
Towards a standardized bioinformatics infrastructure for N- and O- glycomics.
Rojas-Macias, M. A., Mariethoz, J., Andersson, P., Jin, C., Venkatakrishnan, V., Aoki, N. P., Shinmachi, D., Ashwood, C., Madunic, K., Zhang, T., Miller, R. L., Horlacher, O., Struwe, W. B., Watanabe, Y., Okuda, S., Levander, F., Kolarich, D., Rudd, P. M., Wuhrer, M., Kettner, C., Packer, N. H., Aoki-Kinoshita, K. F., Lisacek, F., Karlsson, N. G. Towards a standardized bioinformatics infrastructure for N- and O- glycomics. Nat. commun. 10(1):3275 (2019).
SMAD4 alteration associates with invasive-front pathological markers and poor prognosis in colorectal cancer.
Oyanagi, H., Shimada, Y., Nagahashi, M., Ichikawa, H., Tajima, Y., Abe, K., Nakano, M., Kameyama, H., Takii, Y., Kawasaki, T., Homma, K. I., Ling, Y., Okuda, S., Takabe, K., Wakai, T. SMAD4 alteration associates with invasive-front pathological markers and poor prognosis in colorectal cancer. Histopathology 74(6):873-882 (2019).
Evolutionary analysis of proline-directed phosphorylation sites in the mammalian growth cone identified using phosphoproteomics.
Igarashi, M., Okuda, S. Evolutionary analysis of proline-directed phosphorylation sites in the mammalian growth cone identified using phosphoproteomics. Mol. Brain 12(1):53 (2019).
Autophagy regulates lipid metabolism through selective turnover of NCoR1.
Saito, T., Kuma, A., Sugiura, Y., Ichimura, Y., Obata, M., Kitamura, H., Okuda, S., Lee, H. C., Ikeda, K., Kanegae, Y., Saito, I., Auwerx, J., Motohashi, H., Suematsu, M., Soga, T., Yokomizo, T., Waguri, S., Mizushima, N., Komatsu, M. Autophagy regulates lipid metabolism through selective turnover of NCoR1. Nat. Commun. 10(1):1567(2019).
Knowledge base toward understanding actionable alterations and realizing precision oncology.
Takeuchi, S., Okuda, S. Knowledge base toward understanding actionable alterations and realizing precision oncology. Int. J. Clin. Oncol. 24(2):123-130 (2019).
BRAF V600E and SRC mutations as molecular markers for predicting prognosis and conversion surgery in Stage IV colorectal cancer.
Shimada, Y., Muneoka, Y., Nagahashi, M., Ichikawa, H., Tajima, Y., Hirose, Y., Ando, T., Nakano, M., Sakata, J., Kameyama, H., Takii, Y., Ling, Y., Okuda, S., Takabe, K., Wakai, T. BRAF V600E and SRC mutations as molecular markers for predicting prognosis and conversion surgery in Stage IV colorectal cancer. Sci. Rep. 9(1):2466 (2019).