jPOSTrepo: an international standard data repository for proteomes.
Okuda, S., Watanabe, Y., Moriya, Y., Kawano, S., Yamamoto, T., Matsumoto, M., Takami, T., Kobayashi, D., Araki, N., Yoshizawa, A. C., Tabata, T., Sugiyama, N., Goto, S., and Ishihama, Y. jPOSTrepo: an international standard data repository for proteomes. Nucleic Acids Res. 45:D1107-D1111 (2017).
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.
Deutsch, E. W., Csordas, A., Sun, Z., Jarnuczak, A., Perez-Riverol, Y., Ternent, T., Campbell, D. S., Bernal-Llinares, M., Okuda, S., Kawano, S., Moritz, R. L., Carver, J. J., Wang, M., Ishihama, Y., Bandeira, N., Hermjakob, H., Vizcaíno, J. A. The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. Nucleic Acids Res. 45:D1100-1106 (2017).
Genomic landscape of colorectal cancer in Japan: clinical implications of comprehensive genomic sequencing for precision medicine.
Nagahashi, M., Wakai, T., Shimada, Y., Ichikawa, H., Kameyama, H., Kobayashi, T., Sakata, J., Yagi, R., Sato, N., Kitagawa, Y., Uetake, H., Yoshida, K., Oki, E., Kudo, S.E., Izutsu, H., Kodama, K., Nakada, M., Tse, J., Russell, M., Heyer, J., Powers, W., Sun, R., Ring, J. E., Takabe, K., Protopopov, A., Ling, Y., Okuda, S., Lyle, S. Genomic landscape of colorectal cancer in Japan: clinical implications of comprehensive genomic sequencing for precision medicine. Genome Med. 8(1):136 (2016).
An adenylyl cyclase with a phosphodiesterase domain in basal plants with a motile sperm system.
Kasahara, M., Suetsugu, N., Urano, Y., Yamamoto, C., Ohmori, M., Takada, Y., Okuda, S., Nishiyama, T., Sakayama, H., Kohchi, T., Takahashi, F. An adenylyl cyclase with a phosphodiesterase domain in basal plants with a motile sperm system. Sci. Rep. 6:39232 (2016).
GlycoEpitope: A Practical Guide to Using Glycomics Databases.
Shujiro Okuda, Hiromi Nakao and Toshisuke Kawasaki GlycoEpitope: A Practical Guide to Using Glycomics Databases. 227-245 (2016). (ISBN: 978-4-431-56452-2)
Development of a long indel detection method using the realignment of the misaligned reads.
Shigemizu, D., Miya, F., Fujimoto, A., Boroevich, K. A., Okuda, S., Tsunoda, T. Development of a long indel detection method using the realignment of the misaligned reads. ASHG2016, Vancouver (2016/10).
Mutations in SDR9C7 gene encoding an enzyme for vitamin A metabolism underlie autosomal recessive congenital ichthyosis.
Shigehara, Y., Okuda, S., Nemer, G., Chedraoui, A., Hayashi, R., Bitar, F., Nakai, H., Abbas, O., Daou, L., Abe, R., Sleiman, M. B., Kibbi, A. G., Kurban, M., Shimomura, Y. Mutations in SDR9C7 gene encoding an enzyme for vitamin A metabolism underlie autosomal recessive congenital ichthyosis. Hum. Mol. Genet. 25(20):4484-4493 (2016).
New Filtering Functionality in GlyTouCan, The Glycan Repository.
Aoki, N. P., Aoki-Kinoshita, K. F., Shinmachi, D., Yamada, I., Tsuchiya, S., Matsubara, M., Okuda, S., Fujita, N., Suzuki, Y., Fujita, A., Solovieva, E., Shikanai, T., Kawasaki, T., Narimatsu, H. New Filtering Functionality in GlyTouCan, The Glycan Repository. ACGG2016 (2016/10/13).
Integrating Life Science Database with Semantic Web Technologies.
Shinmachi, D., Aoki-Kinoshita, K. F., Aoki, N. P., Yamada, I., Tsuchiya, S., Matsubara, M., Okuda, S., Fujita, N., Suzuki, Y., Fujita, A., Solovieva, E., Shikanai, T., Kawasaki, T., Narimatsu, H. Integrating Life Science Database with Semantic Web Technologies. ACGG2016 (2016/10/13).
Rare UNC13B variations and risk of schizophrenia: Whole-exome sequencing in a multiplex family and follow-up resequencing and a case-control study.
Egawa, J., Hoya, S., Watanabe, Y., Nunokawa, A., Shibuya, M., Ikeda, M., Inoue, E., Okuda, S., Kondo, K., Saito, T., Kaneko, N., Muratake, T., Igeta, H., Iwata, N., Someya, T. Rare UNC13B variations and risk of schizophrenia: Whole-exome sequencing in a multiplex family and follow-up resequencing and a case-control study. Am. J. Med. Genet. B. Neuropsychiatr. Genet. 171(6):797-805 (2016)
PubMed American Journal of Medical Genetics Part B Neuropsychiatric Genetics