The jPOST environment: an integrated proteomics data repository and database.
Moriya, Y., Kawano, S., Okuda, S., Watanabe, Y., Matsumoto, M., Takami, T., Kobayashi, D., Yamanouchi, Y., Araki, N., Yoshizawa, A. C., Tabata, T., Iwasaki, M., Sugiyama, N., Tanaka, S., Goto, S., Ishihama, Y. The jPOST environment: an integrated proteomics data repository and database. Nucleic Acids Res. 47(D1):D1218-D1224 (2019).
Novel gene fusions found in cervical cancer.
Ling, Y., Okuda, S. Novel gene fusions found in cervical cancer. EBioMedicine 38:13-14 (2018).
Clinical Significance of BRAF Non-V600E Mutations in Colorectal Cancer: A Retrospective Study of Two Institutions.
Shimada, Y., Tajima, Y., Nagahashi, M., Ichikawa, H., Oyanagi, H., Okuda, S., Takabe, K., Wakai, T. Clinical Significance of BRAF Non-V600E Mutations in Colorectal Cancer: A Retrospective Study of Two Institutions. J. Surg. Res. 232:72-81 (2018).
Novel MXD4-NUTM1 fusion transcript identified in primary ovarian undifferentiated small round cell sarcoma.
Tamura, R., Nakaoka, H., Yoshihara, K., Mori, Y., Yachida, N., Nishikawa, N., Motoyama, T., Okuda, S., Inoue, I., Enomoto, T. Novel MXD4-NUTM1 fusion transcript identified in primary ovarian undifferentiated small round cell sarcoma. Genes Chromosomes Cancer 57(11):557-563 (2018).
Common driver mutations and smoking history affect tumor mutation burden in lung adenocarcinoma.
Nagahashi, M., Sato, S., Yuza, K., Shimada, Y., Ichikawa, H., Watanabe, S., Takada, K., Okamoto, T., Okuda, S., Lyle, S., Takabe, K., Tsuchida, M., Wakai, T. Common driver mutations and smoking history affect tumor mutation burden in lung adenocarcinoma. J. Surg. Res. 230:181-185 (2018).
Analysis of polyamine biosynthetic- and transport ability of human indigenous Bifidobacterium.
Sugiyama, Y., Nara, M., Sakanaka, M., Kitakata, A., Okuda, S., Kurihara, S. Analysis of polyamine biosynthetic- and transport ability of human indigenous Bifidobacterium. Biosci. Biotechnol. Biochem. 82(9):1606-1614 (2018).
Sharing of human milk oligosaccharides degradants within bifidobacterial communities in faecal cultures supplemented with Bifidobacterium bifidum.
Gotoh, A., Katoh, T., Ling, Y., Sakanaka, M., Yamada, C., Asakuma, S., Urashima, T., Tomabechi, Y., Katayama-Ikegami, A., Kurihara, S., Yamamoto, K., Harata, G., He, F., Hirose, J., Kitaoka, M., Okuda, S., Katayama, T. Sharing of human milk oligosaccharides degradants within bifidobacterial communities in faecal cultures supplemented with Bifidobacterium bifidum. Sci. Rep. 8(1): 13958 (2018).
Computational approaches towards understanding human genome, proteome, and proteogenome data
2018 Taiwan-Japan Joint Conference for Genomics and Proteogenomics and Annual Retreat of Taiwan Genomics and Genetics Society, “Computational approaches towards understanding human genome, proteome, and proteogenome data”, DoubleTree by Hilton Hotel Naha Shuri Castle, Japan (2018/8/31).
Semantic Web Technologies to Integrate Life Science Data through GlyTouCan.
Yamada, I, Shinmachi, D., Aoki, N., Watanabe, Y., Okuda S., and Aoki-Kinoshita, K. Semantic Web Technologies to Integrate Life Science Data through GlyTouCan. ISMB2018, Chicago (2018/7/6).
Pathogenic germline BRCA1/2 mutations and familial predisposition to gastric cancer.
Ichikawa, H., Wakai, T., Nagahashi, M., Shimada, Y., Hanyu, T., Kano, Y., Muneoka, Y., Ishikawa, T., Takizawa, K., Tajima, Y., Sakata, J., Kobayashi, T., Kameyama, H., Yabusaki, H., Nakagawa, S., Sato, N., Kawasaki, T., Homma, K., Okuda, S., Lyle, S., Takabe, K. Pathogenic germline BRCA1/2 mutations and familial predisposition to gastric cancer. JCO Precis. Oncol. 2:PO.18.00097 (2018).