PCPE-1, a brown adipose tissue-derived cytokine, promotes obesity-induced liver fibrosis.
Hsiao, Y.T., Yoshida, Y., Okuda, S., Abe, M., Mizuno, S., Takahashi, S., Nakagami, H., Morishita, R., Kamimura, K., Terai, S., Aung, T.M., Li, J., Furihata, T., Tang, J.Y., Walsh, K., Ishigami, A., Minamino, T., Shimizu, I. PCPE-1, a brown adipose tissue-derived cytokine, promotes obesity-induced liver fibrosis. EMBO J. 43(21):4846-4869(2024).
Landscape of homologous recombination deficiency in gastric cancer and clinical implications for first-line chemotherapy.
Ichikawa, H., Aizawa, M., Kano, Y., Hanyu, T., Muneoka, Y., Hiroi, S., Ueki, H., Moro, K., Hirose, Y., Miura, K., Shimada, Y., Sakata, J., Yabusaki, H., Nakagawa, S., Kawasaki, T., Okuda, S., Wakai, T. Landscape of homologous recombination deficiency in gastric cancer and clinical implications for first-line chemotherapy. Gastric Cancer 27(6):1273-1286(2024).
Reevaluating hybrid neurofibroma/schwannoma: Predominance of schwannoma features despite CD34 positivity and initial neurofibroma diagnosis.
Katsumi, T., Hayashi, R., Takei, S., Ansai, O., Takatsuka,S., Takenouchi, T., Saito, K., Suda, K., Yoshihara, K., Nagai, T., Okuda, S., Fukumoto, T., Ansai, S. I., Nakamura, A., Katsuumi, K., Ariizumi, T., Ogose, A., Kawashima, H., Abe, R. Reevaluating hybrid neurofibroma/schwannoma: Predominance of schwannoma features despite CD34 positivity and initial neurofibroma diagnosis. J. Dermatol. 51(11):1461-1469(2024).
Insights into predicting small molecule retention times in liquid chromatography using deep learning.
Liu, Y., Yoshizawa, A.C., Ling, Y., Okuda, S. Insights into predicting small molecule retention times in liquid chromatography using deep learning. J. Cheminform. 16(1):113(2024)
Pathological and Biological Significance of the Specific Glycan, TRA-1-60, on Aggressive Gastric Adenocarcinoma.
Mitsui, A., Iioka, H., Ling, Y., Okuda, S., Kurose, A., Schopperle, M., Kondo, T., Sakaguchi, M., Saito, K., Kondo, E. Pathological and Biological Significance of the Specific Glycan, TRA-1-60, on Aggressive Gastric Adenocarcinoma. Lab Invest. 104(7):102073(2024).
PubMed Laboratory Investigation
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Enteropathway: the metabolic pathway database for the human gut microbiota.
Shiroma, H., Darzi, Y., Terajima, E., Nakagawa, Z., Tsuchikura, H., Tsukuda, N., Moriya, Y., Okuda, S., Goto, S., Yamada, T. Enteropathway: the metabolic pathway database for the human gut microbiota. Brief. Bioinform. 25(5):bbae419(2024).
Clinical application of targeted tumour sequencing tests for detecting ERBB2 amplification and optimizing anti-HER2 therapy in gastric cancer.
Ichikawa, H., Usui, K., Aizawa, M., Shimada, Y., Muneoka, Y., Kano, Y., Sugai, M., Moro, K., Hirose, Y., Miura, K., Sakata, J., Yabusaki, H., Nakagawa, S., Kawasaki, T., Umezu, H., Okuda, S., Wakai, T. Clinical application of targeted tumour sequencing tests for detecting ERBB2 amplification and optimizing anti-HER2 therapy in gastric cancer. BMC Cancer 24(1):719(2024).
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Genetic engineering employing MPB70 and its promoter enables efficient secretion and expression of foreign antigen in bacillus Calmette Guérin (BCG) Tokyo.
Takeishi, A., Shaban, A. K., Kakihana, T., Takihara, H., Okuda, S., Osada, H., Suameitria Dewi, D. N. S., Ozeki, Y., Yoshida, Y., Nishiyama, A., Tateishi, Y., Aizu, Y., Chuma, Y., Onishi, K., Hayashi, D., Yamamoto, S., Mukai,T., Ato, M., Thai, D. H., Nhi, H. T. T., Shirai, T., Shibata, S., Obata, F., Fujii, J., Yamayoshi, S., Kiso, M., Matsumoto, S. Genetic engineering employing MPB70 and its promoter enables efficient secretion and expression of foreign antigen in bacillus Calmette Guérin (BCG) Tokyo. Microbiol. Immunol. 68(4):130-147(2024).
Mucin phenotype and genetic alterations in non-V600E BRAF-mutated colorectal cancer.
Ozeki, H., Shimada, Y., Nakano, M., Kondo, S., Ohashi, R., Miwa, Y., Yamai, D., Matsumoto, A., Abe, K., Tajima, Y., Ichikawa, H., Sakata, J., Takii, Y., Sugai, M., Nagai, T., Ling, Y., Okuda, S., Wakai, T. Mucin phenotype and genetic alterations in non-V600E BRAF-mutated colorectal cancer. Hum. Pathol. 145:71-79(2024).
Current status of the jPOST and JPDM projects and future approaches to multi-omics data integration.
HUPO-PSI Kyoto Symposium 2024, “Current status of the jPOST and JPDM projects and future approaches to multi-omics data integration.”, Fujita Commemorative Lecture Hall Kyoto University (2024/3/21).