Development of an International Glycan Structure Repository.
Aoki-Kinoshita, K., Agravat, S., Aoki, N. P., Arpinar, S., Cummings, R. D., Fujita, A., Fujita, N., Hart, G. M., Haslam, S., Kawasaki, T., Matsubara, M., Moreman, K. W., Narimatsu, H., Okuda, S., Pierce, J. P., Ranzinger, R., Shinmachi, D., Solovieva, E., Suzuki, Y., Tsuchiya, S., Yamada, York, W. S., Zaia. J. Development of an International Glycan Structure Repository. SFG&JSCR2014, Honolulu (2014/11/19).
GlycoEpitope: A Database for Carbohydrate Antigen and Antibody.
Shujiro Okuda, Hiromi Nakao and Toshisuke Kawasaki GlycoEpitope: A Database for Carbohydrate Antigen and Antibody. Glycoscience: Biology and Medicine、 267-273 (2014). (ISBN 978-4-431-54840-9)
Concept of Japan Proteome Standard repository/database (jPOST).
Kawano, S., Ishihama, Y., Yamamoto, T., Okuda, S., Tomonaga, T., Matsumoto, M., Nakagami, H., Kondo, T., Ono, M., Ohtsuki, S., Araki, N. Concept of Japan Proteome Standard repository/database (jPOST). HUPO2014, Madrid (2014/10).
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
Katayama, T., Wilkinson M. D., Aoki-Kinoshita, K. F., Kawashima, S., Yamamoto, Y., Yamaguchi, A., Okamoto, S., Kawano, S., Kim, J. D., Wang, Y., Wu, H., Kano, Y., Ono, H., Bono, H., Kocbek, S., Aerts, J., Akune, Y., Antezana, E., Arakawa, K., Aranda, B., Baran, J., Bolleman, J., Bonnal, R. J., Buttigieg, P. L., Campbell, M. P., Chen, Y. A., Chiba, H., Cock, P. J., Cohen, K. B., Constantin, A., Duck, G., Dumontier, M., Fujisawa, T., Fujiwara, T., Goto, N., Hoehndorf, R., Igarashi, Y., Itaya, H., Ito, M., Iwasaki, W., Kalaš, M., Katoda, T., Kim, T., Kokubu, A., Komiyama, Y., Kotera, M., Laibe, C., Lapp, H., Lütteke, T., Marshall, M. S., Mori, T., Mori, H., Morita, M., Murakami, K., Nakao, M., Narimatsu, H., Nishide, H., Nishimura, Y., Nystrom-Persson, J., Ogishima, S., Okamura, Y., Okuda, S., Oshita, K., Packer, N. H., Prins, P., Ranzinger, R., Rocca-Serra, P., Sansone, S., Sawaki, H., Shin, S. H., Splendiani, A., Strozzi, F., Tadaka, S., Toukach, P., Uchiyama, I., Umezaki, M., Vos, R., Whetzel, P. L., Yamada, I., Yamasaki, C., Yamashita, R., York, W. S., Zmasek, C. M., Kawamoto, S., Takagi, T. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semantics 5(1):5 (2014).
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.
Nakaya, A., Katayama, T., Itoh, M., Hiranuka, K., Kawashima, S., Moriya, Y., Okuda, S., Tanaka, M., Tokimatsu, T., Yamanishi, Y., Yoshizawa, A. C., Kanehisa, M., Goto, S. KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Res. 41: D353-7 (2013).
ODB: a database for operon organizations, 2011 update.
Okuda, S., Yoshizawa, A. C. ODB: a database for operon organizations, 2011 update. Nucleic Acids Res. 39:D552-5 (2011).
KEGG for linking genomes to life and the environment.
Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36:D480-4 (2008).
ODB: a database of operons accumulating known operons across multiple genomes.
Okuda, S., Katayama, T., Kawashima, S., Goto, S., Kanehisa, M. ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Res. 34: D358-62 (2006).