Profiling of host genetic alterations and intra-tumor microbiomes in colorectral cancer.
Okuda, S., Shimada, Y., Tajima, Y., Yuza, K., Hirose, Y., Ichikawa, H., Nagahashi, M., Sakata, J., Ling, Y., Miura, N., Sugai, M., Watanabe, Y., Takeuchi, S., Wakai, T. Profiling of host genetic alterations and intra-tumor microbiomes in colorectal cancer. Comput. Struct. Biotechnol. J. 19:3330-3338(2021).
Adipose most abundant 2 protein is a predictive marker for cisplatin sensitivity in cancers.
Kamimura, K., Suda, T., Fukuhara, Y., Okuda, S., Watanabe, Y., Yokoo, T., Osaki, A., Waguri, N., Ishikawa, T., Sato, T., Aoyagi, Y., Takamura, M., Wakai, T., Terai, S. Adipose most abundant 2 protein is a predictive marker for cisplatin sensitivity in cancers. Sci. Rep. 11(1):6255(2021).
Mutational signatures in squamous cell carcinoma of the lung.
Osoegawa, A., Takada, K., Okamoto, T., Sato, S., Nagahashi, M., Tagawa, T., Tsuchida, M., Oki, E., Okuda, S., Wakai, T., Mori, M. Mutational signatures in squamous cell carcinoma of the lung. J. Thorac. Dis. 13(2):1075-1082(2021).
Sphingosine Kinase 1 is Associated With Immune Cell-Related Gene Expressions in Human Breast Cancer.
Tsuchida, J., Nagahashi, M., Nakajima, M., Katsuta, E., Rashid, O. M., Qi, Q., Yan, L., Okuda, S., Takabe, K., Wakai, T. Sphingosine Kinase 1 is Associated With Immune Cell-Related Gene Expressions in Human Breast Cancer. J. Surg. Res. 256:645-656(2020).
Verification of the Japanese staging system for rectal cancer, focusing on differences with the TNM classification.
Arabiki, M., Shimada, Y., Nakano, M., Tanaka, K., Oyanagi, H., Nakano, M., Ling, Y., Okuda, S., Takii, Y., Wakai, T. Verification of the Japanese staging system for rectal cancer, focusing on differences with the TNM classification. Surgery Today 50(11):1443-1451(2020).
Frequent Germline and Somatic Single Nucleotide Variants in the Promoter Region of the Ribosomal RNA Gene in Japanese Lung Adenocarcinoma Patients.
Ohashi, R., Umezu, H., Sato, A., Abé, T., Kondo, S., Daigo, K., Sato, S., Hara, N., Miyashita, A., Ikeuchi, T., Motoyama, T., Kishi, M., Nagaoka, T., Horiuchi, K., Shiga, A., Okuda, S., Sekiya, T., Ohtsubo, A., Ichikawa, K., Kagamu, H., Kikuchi, T., Watanabe, S., Tanuma, J-I., Schraml, P., Hamakubo, T., Tsuchida, M., Ajioka, Y. Frequent Germline and Somatic Single Nucleotide Variants in the Promoter Region of the Ribosomal RNA Gene in Japanese Lung Adenocarcinoma Patients. Cells 9(11):2409(2020).
Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer.
Ling, Y., Watanabe, Y., Nagahashi, M., Shimada, Y., Ichikawa, H., Wakai, T., Okuda, S. Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer. Comput. Struct. Biotechnol. J. 18:3301-3308(2020).
Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics.
Yang, M., Petralia, F., Li, Z., Li, H., Ma, W., Song, X., Kim, S., Lee, H., Yu, H., Lee, B., Bae, S., Heo, E., Kaczmarczyk, J., Stępniak, P., Warchoł, M., Yu, T., Calinawan, A. P., Boutros, P. C., Payne, S. H., Reva, B.; NCI-CPTAC-DREAM Consortium, Boja, E., Rodriguez, H., Stolovitzky, G., Guan, Y., Kang, J., Wang, P., Fenyö, D., Saez-Rodriguez, J. Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics. Cell Systems 11(2):186-195.e9 (2020).
RNF43 mutation is associated with aggressive tumor biology along with BRAF V600E mutation in right-sided colorectal cancer.
Matsumoto, A., Shimada, Y., Nakano, M., Oyanagi, H., Tajima, Y., Nakano, M., Kameyama, H., Hirose, Y., Ichikawa, H., Nagahashi, M., Nogami, H., Maruyama, S., Takii, Y., Ling, Y., Okuda, S., Wakai, T. RNF43 mutation is associated with aggressive tumor biology along with BRAF V600E mutation in right-sided colorectal cancer. Oncol. Rep. 43(6):1853-1862(2020).
XCL1 expression correlates with CD8-positive T cells infiltration and PD-L1 expression in squamous cell carcinoma arising from mature cystic teratoma of the ovary.
Tamura, R., Yoshihara, K., Nakaoka, H., Yachida, N., Yamaguchi, M., Suda, K., Ishiguro, T., Nishino, K., Ichikawa, H., Homma, K., Kikuchi, A., Ueda, Y., Takei, Y., Fujiwara, H., Motoyama, T., Okuda, S., Wakai, T., Inoue, I., Enomoto, T. XCL1 expression correlates with CD8-positive T cells infiltration and PD-L1 expression in squamous cell carcinoma arising from mature cystic teratoma of the ovary. Oncogene 39(17):3541-3554(2020).