Paper

• • Paper

  The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.

  Hashimoto, K., Yoshizawa, A. C., Okuda, S., Kuma, K., Goto, S., Kanehisa, M. The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.  J. Lipid Res. 49(1):183-91 (2008). 

  PubMed Journal of Lipid Research
• • Paper

  KEGG for linking genomes to life and the environment.

  Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T.,  Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36:D480-4 (2008).

  PubMed Nucleic Acids Research
• • Paper

  KAAS: an automatic genome annotation and pathway reconstruction server.

  Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C., Kanehisa, M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-5 (2007).

  PubMed Nucleic Acids Research

   
• • Paper

  Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli.

  Okuda, S., Kawashima, S., Kobayashi, K., Ogasawara, N., Kanehisa, M., Goto, S. Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli. BMC Genomics 8:48 (2007).

  PubMed BMC Genomics
• • Paper

  Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.

  Tanaka, M., Yamada, T., Itoh, M., Okuda, S., Goto S., Kanehisa, M. Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. Genome Inform. 17(1):230-9 (2006).

  PubMed Genome Informatics
• • Paper

  Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.

  Yoshizawa, A.C., Kawashima, S., Okuda, S., Fujita, M., Itoh, M., Moriya, Y., Hattori, M., Kanehisa, M. Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic. Traffic 7(8): 1104-18 (2006).

  PubMed Traffic
• • Paper

  ODB: a database of operons accumulating known operons across multiple genomes.

  Okuda, S., Katayama, T., Kawashima, S., Goto, S., Kanehisa, M. ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Res. 34: D358-62 (2006).

  PubMed Nucleic Acids Research
• • Paper

  Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.

  Okuda, S., Kawashima, S., Goto, S., and Kanehisa, M.; Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. Genome Inform. 16(1): 116-24 (2005).

  PubMed Genome Informatics
• • Paper

  Electrophoretic mobility of Bacillus subtilis knockout mutants with and without flagella.

  Okuda, S., Igarashi R., Kusui, Y., Kasahara, Y., Morisaki, H. Electrophoretic mobility of Bacillus subtilis knockout mutants with and without flagella. J. Bacteriol. 185(13): 3711-7 (2003).

  PubMed Journal of Bacteriology