Computational approaches towards understanding human genome, proteome, and proteogenome data
2018 Taiwan-Japan Joint Conference for Genomics and Proteogenomics and Annual Retreat of Taiwan Genomics and Genetics Society, “Computational approaches towards understanding human genome, proteome, and proteogenome data”, DoubleTree by Hilton Hotel Naha Shuri Castle, Japan (2018/8/31).
Semantic Web Technologies to Integrate Life Science Data through GlyTouCan.
Yamada, I, Shinmachi, D., Aoki, N., Watanabe, Y., Okuda S., Aoki-Kinoshita, K. Semantic Web Technologies to Integrate Life Science Data through GlyTouCan. ISMB2018, Chicago (2018/7/6).
Pathogenic germline BRCA1/2 mutations and familial predisposition to gastric cancer.
Ichikawa, H., Wakai, T., Nagahashi, M., Shimada, Y., Hanyu, T., Kano, Y., Muneoka, Y., Ishikawa, T., Takizawa, K., Tajima, Y., Sakata, J., Kobayashi, T., Kameyama, H., Yabusaki, H., Nakagawa, S., Sato, N., Kawasaki, T., Homma, K., Okuda, S., Lyle, S., Takabe, K. Pathogenic germline BRCA1/2 mutations and familial predisposition to gastric cancer. JCO Precis. Oncol. 2:PO.18.00097 (2018).
Clinical and Genetic Implications of Mutation Burden in Squamous Cell Carcinoma of the Lung.
Okamoto, T., Takada, K., Sato, S., Toyokawa, G., Tagawa, T., Shoji, F., Nakanishi, R., Oki, E., Koike, T., Nagahashi, M., Ichikawa, H., Shimada, Y., Watanabe, S., Kikuchi, T., Akazawa, K., Lyle, S., Takabe, K., Okuda, S., Sugio, K., Wakai, T., Tsuchida, M., Maehara, Y. Clinical and Genetic Implications of Mutation Burden in Squamous Cell Carcinoma of the Lung. Ann. Surg. Oncol. 25(6):1564-1571 (2018).
Growth Cone Phosphoproteomics Reveals that GAP-43 Phosphorylated by JNK Is a Marker of Axon Growth and Regeneration.
Kawasaki, A., Okada, M., Tamada, A., Okuda, S., Nozumi, M., Ito, Y., Kobayashi, D., Yamasaki, T., Yokoyama, R., Shibata, T., Nishina, H., Yoshida, Y., Fujii, Y., Takeuchi, K., Igarashi, M. Growth Cone Phosphoproteomics Reveals that GAP-43 Phosphorylated by JNK Is a Marker of Axon Growth and Regeneration. iScience 4:190-203 (2018).
Lactobacillus rhamnosus GG consumption characteristically modulate gut microbial composition of healthy Japanese subjects. -a randomized, double-blind, placebo-controlled study.
Harata, G., Miyazawa, K., Yoda, K., Yamazaki, K., He, F., Hiramatsu, M., Okuda, S. Lactobacillus rhamnosus GG consumption characteristically modulate gut microbial composition of healthy Japanese subjects. -a randomized, double-blind, placebo-controlled study. ISAPP2018, Singapore (2018/6/5).
AldB controls persister formation in Escherichia coli depending on environmental stress.
Kawai, Y., Matsumoto, S., Ling, Y., Okuda, S., Tsuneda, S. AldB controls persister formation in Escherichia coli depending on environmental stress. Microbiol. Immunol. 62(5):299-309 (2018).
Genome-wide analysis of single nucleotide variants on phosphorylation motifs.
Yoshizaki, H., Ling Y., Kohno, M., Okuda, S. Genome-wide analysis of single nucleotide variants on phosphorylation motifs. ASBMB2018, San Diego (2018/4/25).
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis.
Shigemizu, D., Miya, F., Akiyama, S., Okuda, S., Boroevich, K. A., Fujimoto, A., Nakagawa, H., Ozaki, K., Niida, S., Kanemura, Y., Okamoto, N., Saitoh, S., Kato, M., Yamasaki, M., Matsunaga, T., Mutai, H., Kosaki, K., Tsunoda, T. IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis. Sci. Rep. 8(1):10367 (2018).
Unique transcriptional profile of native persisters in Escherichia coli.
Matsumoto, S., Kawai, Y., Miyagawa, S., Iwamoto, Y., Okuda, S., Sanchez-Gorostiaga, A., Vicente, M., Tsuneda, S. Unique transcriptional profile of native persisters in Escherichia coli. J. Biosci. Bioeng. 125(1):15-22 (2018).