Bioinformatics laboratory

Niigata University Graduate School of Medical and Dental Sciences

About Us

Bioinformatics laboratory focuses on the following topics.


Functional genomics/metagenomics



  • Human gut microbiomes

  • Comparative metagenomics

  • Evolution of phosphorylation

  • Cancer genomics


Database construction



  • HEMM: Human - Earth Microbes and Microbiomes

  • ODB: Operon DataBase

  • GlycoEpitope

  • jPOST: Japan ProteOme STandard repository/database.

Recent Publications

» All publications
Poster

吉沢明康、田畑剛、守屋勇樹、河野信、奥田修二郎、渡辺由、山本格、松本雅記、高見知代、小林大樹、荒木令江、杉山直幸、五斗進、石濱泰、「jPOST:再解析プロトコルの開発」、第39回日本分子生物学会年会、横浜、(2016/12/1)

Poster

守屋勇樹、河野信、奥田修二郎、渡辺由、山本格、松本雅記、高見知代、小林大樹、荒木令江、吉沢明康、田畑剛、杉山直幸、五斗進、石濱泰、「プロテオームデータベースプロジェクト」、第39回日本分子生物学会年会、横浜、(2016/12/1)

Poster

奥田修二郎、渡辺由、守屋勇樹、河野信、山本格、松本雅記、高見知代、小林大樹、荒木令江、吉沢明康、田畑剛、杉山直幸、五斗進、石濱泰、「jPOST:リポジトリ」、第39回日本分子生物学会年会、横浜、(2016/12/1)

Poster

Shigemizu, D., Miya, F., Fujimoto, A., Boroevich, K. A., Okuda, S., Tsunoda, T. Development of a long indel detection method using the realignment of the misaligned reads. ASHG2016, Vancouver (2016/10)

Poster

Yoshizawa, A. C., Tabata, T., Moriya, Y., Kawano, S., Okuda, S., Watanabe, Y., Yamamoto, T., Matsumoto, M., Takami, T., Kobayashi, D., Araki, N., Sugiyama, N., Goto, S., and Ishihama, Y. jPOST for Asia and Oceania: Re-analysis Protocol. AOHUPO2016, Taiwan (2016/9)

Poster

Moriya, Y., Kawano, S., Okuda, S., Watanabe, Y., Yamamoto, T., Matsumoto, M., Takami, T., Kobayashi, D., Araki, N., Yoshizawa, A. C., Tabata, T., Sugiyama, N., Goto, S., and Ishihama, Y. jPOST for Asia and Oceania: Current Status in 2016. AOHUPO2016, Taiwan (2016/9)

Poster

Okuda, S., Watanabe, Y., Moriya, Y., Kawano, S., Yamamoto, T., Matsumoto, M., Takami, T., Kobayashi, D., Araki, N., Yoshizawa, A. C., Tabata, T., Sugiyama, N., Goto, S., and Ishihama, Y. jPOST for Asia and Oceania: repository opened. AOHUPO2016, Taiwan (2016/9)

Poster

Yoshizawa, A. C., Tabata, T., Moriya, Y., Kawano, S., Okuda, S., Watanabe, Y., Yamamoto, T., Matsumoto, M., Takami, T., Kobayashi, D., Araki, N., Sugiyama, N., Goto, S., and Ishihama, Y. jPOST: Re-analysis Protocol. HUPO2016, Taiwan (2016/9)

Poster

Moriya, Y., Kawano, S., Okuda, S., Watanabe, Y., Yamamoto, T., Matsumoto, M., Takami, T., Kobayashi, D., Araki, N., Yoshizawa, A. C., Tabata, T., Sugiyama, N., Goto, S., and Ishihama, Y. jPOST: Current Status in 2016. HUPO2016, Taiwan (2016/9)

Poster

Okuda, S., Watanabe, Y., Moriya, Y., Kawano, S., Yamamoto, T., Matsumoto, M., Takami, T., Kobayashi, D., Araki, N., Yoshizawa, A. C., Tabata, T., Sugiyama, N., Goto, S., and Ishihama, Y. jPOST: repository opened. HUPO2016, Taiwan (2016/9)